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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027741 Open in IMG/M |
| Scaffold ID | Ga0209085_1002074 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11621 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (93.55%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000821 | Metagenome / Metatranscriptome | 876 | Y |
| F003784 | Metagenome | 468 | Y |
| F003863 | Metagenome | 464 | Y |
| F004110 | Metagenome | 452 | Y |
| F006653 | Metagenome / Metatranscriptome | 367 | Y |
| F014590 | Metagenome | 261 | Y |
| F058947 | Metagenome | 134 | Y |
| F083706 | Metagenome / Metatranscriptome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209085_100207411 | F003784 | GGA | MYDNDRERVGHNVTDFAAYGLSHFAAGQADATNTHTPTTNPLVDHAAVTGYRGIGVATEDLTSFIESFASLRASRVKGVGHEQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDRVLPDCD |
| Ga0209085_100207412 | F004110 | AGG | VTELHPVIYDLVPSVANTIHRRYKNHVERDDIKQELMAWAMTRVEDHTIDLMEPIEERRRHNEQRIAWQMKRAGERYARKEKAAKSGYQTNDEAYYESATLGQLLPFVIASVIDGTVLEQAQEMISDGQPKGSSSPAEGGNLLANLIDIKKGYLKLEQDDQAILRMRHHESFTLQQIAGVLECAISTADRRCAQSLRRLQDNLGGVSPWA |
| Ga0209085_100207416 | F014590 | GGAGG | VRTRHLQLVSSTHSDTTIAKSNVPSLFGPVRAGLTTSQRTNDQVLTELLNCLESVVESLNYKSFTLYDTLNTAMEEVFAAVCDTQIEEVGTDETP |
| Ga0209085_100207417 | F003863 | GGAGG | MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIITGDSRLTIAVHTRANAVPDVAGRTDYESADESYNGGEA |
| Ga0209085_100207420 | F000821 | GGAGG | MNEEYLRAKFNLCLDQAEKNIKEEEIALAIKNLERANSAMARLFGIDEGDNE |
| Ga0209085_100207422 | F058947 | GGAG | MISCELQDLEDLMGKAGVLLTGNAYDKAQDYLQDHCVCATYNYLLGYKIGRG |
| Ga0209085_100207425 | F083706 | GAGG | MKYLTPRGWLVAGILIGLSIWGLWEISSHLLWTGTGYEWCENLLTCEGEGK |
| Ga0209085_10020745 | F006653 | AGGAGG | MSEQLSNKYRDNLRIDAVRDASNALRSELDAIKVDLTNFVGALLQSGVVELVKDEEGNVIYKINKVVLVDESVQQN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |