NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1002443

Scaffold Ga0209085_1002443


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1002443 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10605
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000857Metagenome / Metatranscriptome858Y
F005087Metagenome / Metatranscriptome412Y
F012214Metagenome282Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_10024432F000857GGAMIDDEVRVNEEYYSKGILESGIDGVFRQNDKLFNEVKSGTWSQTFNTPNIDYKVGAVDGVRYVQYDQKNVEEVRQFCKERREFHKVHGTDNPFFAGTAHMMQLPKCFAHEISSRWFNNRPWELIKQERKDKILFYAIVNEYYSDFVCHPSGKIPIPYNPSIPTK
Ga0209085_10024433F005087AGGMAALFIQSGNALVSRVANWVGAVPSPLAVTLTNSTGGYYNVLTPSANPLGQVVPGDFIGPSTMLPYTIVISVTSTSILVCDPDGVWANTPYPSTILKLPSQSSMEILTCIQNAEMAMRVIELPALRSDPYSTTNPSILTTDAQGMADIPTDMNWPILFFQDTQPSNQPAGATNVGPWIVYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGGRYVFSPNPGENVTIKAYYQRSYKLLFSPTNNNLDPIVQNNEALASFPEGYLYSTLSAYYDKNKNTDEAQKWKSRFDDAYGLIEDQNFKDKWRGGDQHLTSEFQPRNYRYSFK
Ga0209085_10024437F012214AGGAMADYTKLRTPFSNMSFTPDVPSNALGPNEYNSGRNVEADVRGVKKIYGEQSILSLIPYFPIFMEGGFRANGQFVYIVATRDTNNFGRWYMLTNNSIVNITPGYAANNNVTLPGYTDNINITTSWVGEVFFINDGISAPMYFLPSRTEISSYDAAPDNYIWNYDIGVTKTTAAFMRNFCSPNVGNILVAGNLTKTSGGVTSVYETTIRWSQAFANTGVPASWVPTLSNVANEQEVPVRGQLVDGFFLGGNFYICSYWDTVILSPIAYQSTTTPVFGVRLFNQGRGLLNNNCWTNTDANVYGIDARDIWVFDGSNFNSLGNQKVKNYFFNNLSATYSDRVFMVNNTQKYQIEIYYPDLTSTGWCNKMLAYRYDLQVWNAPKDIQNACMGTEGPVFTGTDFKYASRCVTYAPTGAINAQLIQTDIGNSFINNQPIPALFERNNVVLQTENGPVPYSSKVYIHRALPEIAGTGEVQITVGGANSTAQNPTYGQTGRMNIVTDNPWVTTQQNAVRTVSLKMESNDATDQWNSTAMNWQATIIEDA

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