NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1004775

Scaffold Ga0209085_1004775


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1004775 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7226
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000273Metagenome / Metatranscriptome1401Y
F015857Metagenome / Metatranscriptome251Y
F093169Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100477511F093169GAGGMNDYTCPMVSTLGILEPMNPMQPQPNAYIGPLVASDWNMPTVDMGYNYQVSEPVPGALRHLHGVPEAMRVFDAVNFLFPV
Ga0209085_10047752F000273N/AMTEKLEAKSQLIEKTAFAVLPILFTCVVYLMSSLDKLNHDVTVLNAKISLVVTSDNKQAPNSGAELAREKLRQDLEKEILANRELIHANRERIVILEQRIK
Ga0209085_10047755F015857GAGGMNGQSTYSISDIESFASKFYQGRPLLLTPYAYVLTFSSLAANTSATQTLSITANADFIFTMMHHRATSSAYAGQTVSTKVAPLARILITDSGTNEQFTNAAVDLENYSTNGNIVNDLPYPRIVSGRSTLTIQLSSYEASATINVDLSLEGVLVRAFTG
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