NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1005717

Scaffold Ga0209085_1005717


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1005717 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6508
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (61.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006255Metagenome377Y
F007848Metagenome343Y
F010521Metagenome302Y
F014955Metagenome258Y
F017107Metagenome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100571712F017107N/AMTDYSENYLKIQQLLKKYHNATLKNQYEKATQIACQLAEETIQLEFATYDQVRKQWLG
Ga0209085_100571715F010521GAGGMKLTPAILSHLYSAIYCMKPFCNYKNMPLPEEIDFIVDKGENMGTYLYDPGNDKYEHTITISEIRCGTLDTVLKVLLHECIHMSRHKSSRWTHHDKEFRNKAYRIWSEIGFVDPLEL
Ga0209085_10057172F006255GGAMGELNQLMLEHEEFLEEALDCMEYGGELLTQAQVDCIRQACGKPNRHKKNPVLTEMFNDFGAIFGGNHA
Ga0209085_10057176F007848N/AMGRNRMKDFLGACLLGAVLGAMFAYGIPAKAQTVQMTNAQGYNVGSVQINGNTAQFVNPMGVTTQIATLYPGQVIIQTSQGVTTAVIGNTGYTVPPSPPTPMTPKVMQ
Ga0209085_10057179F014955AGGMGKMDIEKYIVAATGLGYLVVGLAQYFKGSPSNAFIWLGYAAAQVGLWMNLK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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