Basic Information | |
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Taxon OID | 3300027741 Open in IMG/M |
Scaffold ID | Ga0209085_1005717 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6508 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (61.11%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 2 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006255 | Metagenome | 377 | Y |
F007848 | Metagenome | 343 | Y |
F010521 | Metagenome | 302 | Y |
F014955 | Metagenome | 258 | Y |
F017107 | Metagenome | 242 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209085_100571712 | F017107 | N/A | MTDYSENYLKIQQLLKKYHNATLKNQYEKATQIACQLAEETIQLEFATYDQVRKQWLG |
Ga0209085_100571715 | F010521 | GAGG | MKLTPAILSHLYSAIYCMKPFCNYKNMPLPEEIDFIVDKGENMGTYLYDPGNDKYEHTITISEIRCGTLDTVLKVLLHECIHMSRHKSSRWTHHDKEFRNKAYRIWSEIGFVDPLEL |
Ga0209085_10057172 | F006255 | GGA | MGELNQLMLEHEEFLEEALDCMEYGGELLTQAQVDCIRQACGKPNRHKKNPVLTEMFNDFGAIFGGNHA |
Ga0209085_10057176 | F007848 | N/A | MGRNRMKDFLGACLLGAVLGAMFAYGIPAKAQTVQMTNAQGYNVGSVQINGNTAQFVNPMGVTTQIATLYPGQVIIQTSQGVTTAVIGNTGYTVPPSPPTPMTPKVMQ |
Ga0209085_10057179 | F014955 | AGG | MGKMDIEKYIVAATGLGYLVVGLAQYFKGSPSNAFIWLGYAAAQVGLWMNLK |
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