Basic Information | |
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Taxon OID | 3300027741 Open in IMG/M |
Scaffold ID | Ga0209085_1008085 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5373 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (83.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 2 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003862 | Metagenome / Metatranscriptome | 464 | Y |
F004721 | Metagenome / Metatranscriptome | 426 | Y |
F039991 | Metagenome / Metatranscriptome | 162 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209085_10080851 | F003862 | N/A | MATYTLVTPTLEQGHIGGHRLFTHFKQRTKSYTIILSSGVYSLIQYPTEDELATYTAYYMGGCQHTGVSDAIRTAMIADGIVTSANFTTE |
Ga0209085_100808510 | F004721 | AGG | MALGKDGSSLAAELNRLAGTTGKAEQGAANTYASTTGLGVVAALNIKASSSRQPSAYKGLNAVCNELASTTGKSAVAALRSINV |
Ga0209085_10080856 | F039991 | AGGCGG | MAKQKKETLAVAWCDNGMVDGKFMEGVVDTLINSGVEFCGSLRAHGNQIAQQREMLVNRWYDKNKSDWLLWLDSDIMITPEKFLKLWNRRDAVDIPLLTGVYFTSNEPEQPLMKPLATVYEFAELPEGIGIRRLDPLPKNVFIKVSAAGMGFCLMHRSVITRIKKALPGVPFFTEVGANKQFTGEDIYFFAVVNKAEIPLWCDTAATVGHMKRFNMDENYYDAFGKGKGYAD |
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