Basic Information | |
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Taxon OID | 3300027741 Open in IMG/M |
Scaffold ID | Ga0209085_1008211 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5333 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (86.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F040943 | Metagenome / Metatranscriptome | 161 | Y |
F040944 | Metagenome / Metatranscriptome | 161 | Y |
F086585 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209085_100821115 | F040943 | AGG | MGYKSKTCPKCGAVHNKRGEFCSRSCGNQKKHTPETKALIAKKQTEWMTSGDDKAEAQLHSFTSLGNNQTPDPIAPIRPVDIGNRFVQDGDLWEEV |
Ga0209085_10082114 | F086585 | AGGA | MNDEQLIEISRSVDSYITTLLNKYEITPLSLAAVLLARTMILNKEAGSADDFLKLLNGIADNPPQIKTEMKVH |
Ga0209085_10082116 | F040944 | GGAG | MIKTENEHLFPTGGLSIPYEVAHGITLASLIDSRDYMQSELDQWNANPKDELNPDGYWLHPEDVVNNMKYIRAMNLLIGYYGG |
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