NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1008211

Scaffold Ga0209085_1008211


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1008211 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5333
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (86.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040943Metagenome / Metatranscriptome161Y
F040944Metagenome / Metatranscriptome161Y
F086585Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100821115F040943AGGMGYKSKTCPKCGAVHNKRGEFCSRSCGNQKKHTPETKALIAKKQTEWMTSGDDKAEAQLHSFTSLGNNQTPDPIAPIRPVDIGNRFVQDGDLWEEV
Ga0209085_10082114F086585AGGAMNDEQLIEISRSVDSYITTLLNKYEITPLSLAAVLLARTMILNKEAGSADDFLKLLNGIADNPPQIKTEMKVH
Ga0209085_10082116F040944GGAGMIKTENEHLFPTGGLSIPYEVAHGITLASLIDSRDYMQSELDQWNANPKDELNPDGYWLHPEDVVNNMKYIRAMNLLIGYYGG
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