NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1010468

Scaffold Ga0209085_1010468


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1010468 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4660
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F006543Metagenome / Metatranscriptome370Y
F008812Metagenome / Metatranscriptome327Y
F012108Metagenome / Metatranscriptome283Y
F057320Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_101046811F008812GAGGMIQWVGIVITILGLAYTGIKDYQKGDIKFPPMPQKPALTKVVYPVQYCLMAYDPNVDKVFYLHENGQWHDYAPQQRRYATQAQPYQAQGQEAVGSTHGPQGASVYRYGQSPQASTNPIR
Ga0209085_10104683F012108GGAMIKIELSVRESLNMIANGCSLDMFDKIVCALEVALGVNQRRAVTITGGMNTDNRIHCIKAIRLHTGWGLKEAKDWSDYLVGGWKYDKWYPAPADVKQSMTLKTPEAAEALLRDLVGLGCEGFLS
Ga0209085_10104684F006543GGAGMKKFSFVVDVVADELDRDSVVDSIRDCLSGSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHDGKVEKETAEAVA
Ga0209085_10104688F000325AGGAGMKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVVTEKNKIRSMILDAKRREKSIRWHERGDWFLNGQLDLDYVANVTWACESILADGDTLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKIAPKRPKSKAKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH
Ga0209085_10104689F057320AGGAMSYVGLYDDAGSKNAFYIIKDKKIGRKRVGFKEFESEKEAKFAHRVQKHLAQFDLAPMVYGDVGFIRRHDGEMTFYGYLTEVARPMSECHDEDCDGECFQSECKNGTTISELVYDLGEHGLEYNDAHKGNFGYVRRKGSWVPVVIDLGIESFTDWDEDIYGKFDYDADEDVDSYGACNCVHCKQFRDRG
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