NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1017284

Scaffold Ga0209085_1017284


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1017284 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3508
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031091Metagenome / Metatranscriptome183Y
F032541Metagenome / Metatranscriptome179Y
F061656Metagenome / Metatranscriptome131Y
F061834Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_101728410F061656N/AMPQFCFYSKNNPTQEPVGVVYATSREEAVRFFSLSKQLSTNDFLTIFEVKSYNYGAQEGIAENTKQLLKG
Ga0209085_101728411F032541N/AMSLINEIREMLSEVTKVNFKGNKFVLKIDVNEDPNKKGIKIQFLPTTFAGMSKQQQDDIAIDLGAKLNQGLAPLGLTVERDRELKDKTIVGFFIYIEYLDKIIINALSQAANEPDTNS
Ga0209085_10172842F031091N/AMIKPYVKVFVCELTGIKTTYTYNGASIVSGIVKAEFEYPKEYLDEFAKKEKRQSNLPKTKQMFLNPKTGKEVGYYRAKNLGLVK
Ga0209085_10172849F061834GAGMVHKKELRKILNNYLKGSISIREKDMAREVMEKKLFIENIILLREIEDRRDFMEEEIGVDMSIYEEKFLQVIENLFKIHFSKEQFALIQYYLYQTPTIIDWDGKIDLSDGKDMITVDFETPEQVWNVITSLKEVKK
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