NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1243012

Scaffold Ga0209085_1243012


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1243012 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)710
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003439Metagenome / Metatranscriptome486Y
F019636Metagenome / Metatranscriptome228Y
F070899Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_12430121F003439AGGAMTVNNSRSQNASLAEGATDGKYRKRRPNTTVIPGLGDQDVVKNRAGLHPYMNYGFINS
Ga0209085_12430122F070899AGGAGGMKNDPGLFTDSTGEGMAGAEDVRLSTQRELKTQYNGSKPCIECGTLLNPVQSLHAELCSTCSRRKSAKILKGRMA
Ga0209085_12430123F019636N/AWQAPPEAAYPPQAYIGPFASNQERLLSQSLAVNSMSGEEIQQYVRPPMPQIKLFPEKYGYTDTEISIEDIIELPGRAQQRVESDFSQSPNTPQSSSRNALGGSV
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