NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209355_1033678

Scaffold Ga0209355_1033678


Overview

Basic Information
Taxon OID3300027744 Open in IMG/M
Scaffold IDGa0209355_1033678 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2568
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005587Metagenome / Metatranscriptome395Y
F009056Metagenome / Metatranscriptome323Y

Sequences

Protein IDFamilyRBSSequence
Ga0209355_10336781F005587N/AYRNFSNYYDGNRSIMENNYLVSAIRKLKPNSEFSFTSNDYSTIKWDVLEGNAPTQAEIDAAIEQVKADKITEAATKAAQKAALLAQLGITAEQAKLLLS
Ga0209355_10336784F009056GGAMSVVKKATPAAIAVLRQATAIWPKRNKASDGLLPSAAHI

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