NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209355_1052991

Scaffold Ga0209355_1052991


Overview

Basic Information
Taxon OID3300027744 Open in IMG/M
Scaffold IDGa0209355_1052991 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1960
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043942Metagenome155N
F067747Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0209355_10529911F043942N/ATTSSLCLITGGEMQENEVGLEQLKNVYKAQTEAYLDFNMALINILTNQKELLGKVESLKILSDDEFKKLSKDYAILEKLFENFQTAQLRRDAELEEATLEYTAQISDFGGVVEEMREDVKFIKKMYWDVKNTLNKVAWTVGGIIAFLTILQLVTGKGLVDFVK
Ga0209355_10529915F067747AGGAGMIEVISQVVISIILLLTSMRVVKLPPKPYHQDAKVSVSTSKDRLDKKEKISKFIKLVQPRYSQSYIKKITAAIMKYAAVFKVDPYVIASTAYVESEFKMTSRPCIGMMQLVTPSIRYYDPKRVYNPRTIDGNIAIGTKELSVHLRKYSRKGLPSRVAYRNMYRSYNGSYMKNRYSIKTLLVQTRLEHLS
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