NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1000269

Scaffold Ga0209597_1000269


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1000269 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34448
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (87.93%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003520Metagenome / Metatranscriptome481Y
F025282Metagenome202Y
F102811Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_100026922F025282AGGAGMSYLAAVCHDIKSNTLEATWLEETETELKRVKCRNYSAEQKDEFLADCGADGQKYTDLAG
Ga0209597_100026933F102811AGGAGMATPGSPKAGVTQPRADQPRVNTPTLQRGESSPNLTYRQVGYKTSGGRSQRDYARR
Ga0209597_10002698F003520AGGMANNIAFQAQGKTYRANATTASQIISITADSPCNQLMVANHQPAGTTGQPVYFYVSSNSSATIAAPANGSPQYALVSVPASIRVFTVPTQFGSSPLYIAFIGAAASECYFTPGEGV
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