NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1000927

Scaffold Ga0209597_1000927


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1000927 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19180
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (3.70%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017271Metagenome / Metatranscriptome241N
F025278Metagenome / Metatranscriptome202N
F043816Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_100092723F043816N/AMKELIELRDWVDQQCKTGQPFTCADVLNKIDEMCETDDDIDNLLLTSCYEME
Ga0209597_100092724F017271N/AMITNFEYLTREMTDEEKKLVPILIKGFSTKTKDNPIKAPEIVQSINSKRETLGLKLNFSEVRLRKIVNFIRAEGILPLIATSNGYYCSNDKEEIKNQIESLTQRAEAIMSSANGLNKFL
Ga0209597_10009277F025278N/AMTIFLTIVFLVHLISWVLYQKHQFKERDLYEINPQEAYEQNKKWHFWKGINHISVYAVLFLAFGFKTMLAFATCFWLGFDILCNVIVLKRPAFYVGVTADTDKFIRKVAEFIKIKPEYTSALIKILILTILLILK
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