NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1003189

Scaffold Ga0209597_1003189


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1003189 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10184
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024717Metagenome204Y
F034061Metagenome175N
F060610Metagenome132Y
F061497Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209597_100318911F024717N/AMATPKEISDRINALFSDWNSGFTPLSFAVQDMRREMYIRIFGIDTGRGRNQAGNFLPTKPYTKAYAKIKAANGKPPLELTGFLKRSFATDQTTVVTEGFDTAIYTVADEAGKVEGLEKLYGTIFKPTAEEQSRMLQLHADLLVEQISNQISKP
Ga0209597_100318912F034061N/AMCYESLLGLQGCDRPEPTTGLYIDDLGINQTLLGQLITDQYNSGVELFEAKRAFAWRKMSTDILSRLTPMMKADTVVESKRIGQVVSNAANIDVAVGAGKYTGIRVTIDPNTESFLNFYLSNFKIDIYTMATPVEIFVYDMTTLKLIDSFFYQSEAVEQFIGKTFKANRRKLDLAFVYESLYDTTKMIPKKGSCTDCGGNLRAVHVCPFVDAIGIELTTDGFNVLSSKAKKYTQGMSLVYNVNCDREAWLCSIGGLMAMPLAYATAVEIYNYGLSVSPNQRVNTTVSINIGSKPFATADANDGMIAGRDIAATRYSEELTAMLQNMRLPSDNTCFDCRRNMKYVTALP
Ga0209597_10031895F060610N/AMTMDDGRDSTYTTIDDGCVVGLGCKVHTHHHTIHIEPQIVYQSMEKFTIFGKHYCTNQWGQTYELPADEPMPEPQPMQQTYASDTITPTTSAFLLAPKPEAKIIIKPRTEYSEYKPTMDGPIMGVLLTFTIYLTAQWAWSSMTAWNNLYSELSACLRSSS
Ga0209597_10031899F061497N/AMIDITLEGGYLTFYTSVLGAIASNVELCEVVDDNTLHLGTNVGTFLINVNQFTFNGIKFTNSTKAVNYILNN

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