NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1008471

Scaffold Ga0209597_1008471


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1008471 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6062
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057894Metagenome135N
F059603Metagenome133N
F065768Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_100847110F059603N/AMTTEQKIIKTMNEYYPIEGKIVDGCVTYHSTQRTHESFRMHLMNADPESIVYQYYLSRCAKWIKTLKLHNQKLIPIFVPNGTED
Ga0209597_10084713F065768GAGMSVCSPCYDAGSYVNACLTEFSFGTLPADDTEYIVWLQHNATKKIMQFTATSDAEGYITIEGIQLDPLQGYTIWVTLDGVQQDITVDGDIYTCLSFSAASIGQSPVVIP
Ga0209597_10084718F057894GGAGMRLQDDTFTGHLTPIGSVQDVEVTFKLKAMQKIMEASEDLQVDAPNEYLIGSLRDNDAGYKTADVIIYNKVVRLKLTEEDIKRSKTLSL
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