Scaffold Ga0209597

Basic Information
Taxon OID	3300027746 Open in IMG/M
Scaffold ID	Ga0209597_1009907 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027746 Open in IMG/M

Scaffold ID

Ga0209597_1009907 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5585
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (9.09%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5585

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (9.09%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	6
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012014	Metagenome / Metatranscriptome	284	Y
F021096	Metagenome / Metatranscriptome	220	N
F040589	Metagenome / Metatranscriptome	161	Y
F060705	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_10099073	F012014	N/A	MNLLSKEVLIGAAALGAGAVVAKVVQQKVVPMIAPTASDNIKNLSTLLVGILTPTIVKGSVGTGLGAGMIAVSVAGLVDPYLKSAKIITGFDDTYMGDVLMGETGGDVLMGATDFSAPSNDFTSEGAGEMDY
Ga0209597_10099076	F021096	GGAGG	VAAVVSPIINYFLTHNLCKDYTAIEGEMSTLVTLNFPNTGNYQNSYYFASQTMLDGQNCTITAIEIVPSTELTILPTGQTNVDSSILPNGVLYVSNLKRQIIATLPLYGLQRSANNGKPTFTYFNDQVWQNCYVEFTSNNFTTTITPLTFRVYYVPKIKN
Ga0209597_10099077	F060705	N/A	MAISSLNFIISQFESEKYRYFAIYDEDGDRVYFQNDLIDVETSINKLRNFFKDNQGYYTIRVFSKKLSDKNNLIARDNSTIAKYNVEVSMPVLPQGVNGLTGMGGNSLLPPDDPRSNAPNMFQLLGQMSQVEQQMKLMEKDHAHYREMKELQDRIAKMEEEGSKAKGMGAIVDRLGEQFSDPNVLLGLISGVSQLFKKEAVVPMHGVSRDDIMPMNGIDEQVINNISTRREKMVGAVNFLMQHDANFPENISKLAELAKNKPAIYSMAVSYLNNL
Ga0209597_10099078	F040589	N/A	MSLAQTALLATAIRPRSSTPAAKPSSFSESIAQRPIQWLIVAGAVVYFGGKFIKNVIPTGDNIRKGEAETSTSTENPWSATTFLGQKIPVNTNLLTAAGAFQQAKKVYDALNTYFADDADIVVGVFAALPSKVQVAQVVKSFEAYYKRNILEYLKSGKKTFDFGTGGISDALYNRIIENVKRKPKF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209597_1009907

Overview

Ecosystem & Geography

Associated Families

Sequences