NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1018486

Scaffold Ga0209597_1018486


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1018486 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3857
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104514Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_10184863F104514AGGGGGMIKKDETVSIGWCDNGMTDGKFTEGLLAVVLAGPELGMPISTSIRVQGNQIARQRQALLDHWYDKTKTDWLLWVDSDVVINADIWKLLHNTADSKTHPMVSGIYFISKNTDGSLPIPMPVIFDDVDEYTVKYHHPLPVNEVLKIDMAGMGLVIMHRSVVTKLREKYGTEVSFFAENDQKNDKFVGEDISFFRKCKALEIPLYAHTGAIAKHMKTTTWDYDYYSLYWSMQLLKEQIKDKQAQGE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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