NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1019319

Scaffold Ga0209597_1019319


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1019319 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3759
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022886Metagenome / Metatranscriptome212N
F025032Metagenome203N
F030763Metagenome / Metatranscriptome184N
F053288Metagenome141N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_101931910F053288N/ADMKYALEDKDFYSFEFEHRNEQKRVYVLIHRNKLKSKKRAKHFPISGDLHEVYIQDMVSDKWRRTVNLAKTSLNKSTFYNLIESVIDDEYGLPF
Ga0209597_10193195F025032N/AMISMLKLIEGDSNIDKFTFVQQGANKPSTPYQNIKLVKQGQAKGYQKHNVMLGGRYSGSIYSNKSSFIANGGESNTSFPAKRFKSLRDAIDYVCSNSQPNYNSNTPLDGMDNSFGVKTYN
Ga0209597_10193198F030763AGGMLVIKNYKKIKNQYFGDWQIGRVEEMKECYALQAFNANTRKSITMAIIREPLAEATDTYETAYHFSLVEDDVRPANIIEDVIYHSVLEDMELFGESLTHYLNTI
Ga0209597_10193199F022886GGAMITIKNWDKLTRMFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQKDHPHKGEYLMLCGVSEYWLNKKELEDVDSVYEAIVDVVVRHNLKVKV
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