Basic Information | |
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Taxon OID | 3300027746 Open in IMG/M |
Scaffold ID | Ga0209597_1019319 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3759 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 6 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F022886 | Metagenome / Metatranscriptome | 212 | N |
F025032 | Metagenome | 203 | N |
F030763 | Metagenome / Metatranscriptome | 184 | N |
F053288 | Metagenome | 141 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209597_101931910 | F053288 | N/A | DMKYALEDKDFYSFEFEHRNEQKRVYVLIHRNKLKSKKRAKHFPISGDLHEVYIQDMVSDKWRRTVNLAKTSLNKSTFYNLIESVIDDEYGLPF |
Ga0209597_10193195 | F025032 | N/A | MISMLKLIEGDSNIDKFTFVQQGANKPSTPYQNIKLVKQGQAKGYQKHNVMLGGRYSGSIYSNKSSFIANGGESNTSFPAKRFKSLRDAIDYVCSNSQPNYNSNTPLDGMDNSFGVKTYN |
Ga0209597_10193198 | F030763 | AGG | MLVIKNYKKIKNQYFGDWQIGRVEEMKECYALQAFNANTRKSITMAIIREPLAEATDTYETAYHFSLVEDDVRPANIIEDVIYHSVLEDMELFGESLTHYLNTI |
Ga0209597_10193199 | F022886 | GGA | MITIKNWDKLTRMFRSQIDIGELELYYEITYYYPTLPSNEYYRITLSRISPPQKDHPHKGEYLMLCGVSEYWLNKKELEDVDSVYEAIVDVVVRHNLKVKV |
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