NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1030085

Scaffold Ga0209597_1030085


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1030085 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2864
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007522Metagenome / Metatranscriptome349Y
F021981Metagenome / Metatranscriptome216N
F029438Metagenome188N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_10300854F029438N/AMTNTRKPKTKRKKINRRVVRNSPEPLSKLDVHMITAHEVYKAAKKAGFSDELAWWFVQEPNAMPDWIANDKPDAIIPNIPTPDEDDD
Ga0209597_10300856F007522AGGMSLKEAGLIWVATMVAIIWAYGMYENAKQTHYWRGRKDGWDMHRRMIDNKTDANLN
Ga0209597_10300857F021981N/AMPTSTEKLFNNATTLVHERGVIYGHAIYNMQRISKSISAYIDFPIMPHDVPIINVLQKISRLAESPGHEDSIVDIIAYMAIYKMCIDAETDGEFEFREGE

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