Scaffold Ga0209597_1030085

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209597_1030085

Scaffold Ga0209597_1030085

Overview

Basic Information
Taxon OID	3300027746 Open in IMG/M
Scaffold ID	Ga0209597_1030085 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2864
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007522	Metagenome / Metatranscriptome	349	Y
F021981	Metagenome / Metatranscriptome	216	N
F029438	Metagenome	188	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209597_10300854	F029438	N/A	MTNTRKPKTKRKKINRRVVRNSPEPLSKLDVHMITAHEVYKAAKKAGFSDELAWWFVQEPNAMPDWIANDKPDAIIPNIPTPDEDDD
Ga0209597_10300856	F007522	AGG	MSLKEAGLIWVATMVAIIWAYGMYENAKQTHYWRGRKDGWDMHRRMIDNKTDANLN
Ga0209597_10300857	F021981	N/A	MPTSTEKLFNNATTLVHERGVIYGHAIYNMQRISKSISAYIDFPIMPHDVPIINVLQKISRLAESPGHEDSIVDIIAYMAIYKMCIDAETDGEFEFREGE

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