NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209597_1031341

Scaffold Ga0209597_1031341


Overview

Basic Information
Taxon OID3300027746 Open in IMG/M
Scaffold IDGa0209597_1031341 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2793
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004723Metagenome / Metatranscriptome426Y
F034921Metagenome / Metatranscriptome173Y
F043930Metagenome155N

Sequences

Protein IDFamilyRBSSequence
Ga0209597_10313412F004723N/AMKKGDKFIHIDIVGKKHEVTYTGTRRTIKDCEFEFFVDDKGDSCFFTDTEVKKMKKIE
Ga0209597_10313416F034921GAGMSYIGVAPQDQTNFQYKVIEAQKDFSDYSYPTTKEEYWAIVDKYWPEIKDILLKFTYLDPDDLDKWAKERNSEIASVFNDAWFNAPDNGRIHLIPAWHIFCDLCSESYLLHEPQN
Ga0209597_10313417F043930GAGMNKLEKARWRNILRKAAKANRLFKKGYLVFDHHGIPFEGFKFENGLLYEGSENYRSIWISKDKPWSQHLQTPIKEFNAKRFDKWTAVHPKDIKKI
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