Basic Information | |
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Taxon OID | 3300027747 Open in IMG/M |
Scaffold ID | Ga0209189_1000169 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 56345 |
Total Scaffold Genes | 86 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 73 (84.88%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 3 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F058641 | Metagenome / Metatranscriptome | 134 | Y |
F068451 | Metagenome | 124 | N |
F072087 | Metagenome | 121 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209189_10001693 | F072087 | N/A | MAITYDPRGMDWPQYNKLMTELFASNDVGYVDEENWRQWVDGLNGIGYFGQSAIPDQRMFATWQDWAEQMVGIMSLGN |
Ga0209189_100016933 | F068451 | AGGA | MTVASTLKIVDQLGLIQDQIEALQEQAESLKDQIKLLGAGTYAGAMYVTIVKHTPEKKSTAWAAVAKELNAPDDLIKKHTKITKDIMSATTEALSN |
Ga0209189_100016986 | F058641 | AGGA | MTQSYINPYTGQTINPSQVGYEKLTISANTQLDWPINGNVSDVVANIIEVSATT |
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