Scaffold Ga0209189

Basic Information
Taxon OID	3300027747 Open in IMG/M
Scaffold ID	Ga0209189_1000415 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027747 Open in IMG/M

Scaffold ID

Ga0209189_1000415 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35681
Total Scaffold Genes	57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (70.18%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

35681

Total Scaffold Genes

57 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (70.18%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	3
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012214	Metagenome	282	Y
F012670	Metagenome / Metatranscriptome	278	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209189_100041523	F012214	GAG	MSDYAKIRTPFVNMSFTPDVPSNALGPNEYNSGKNIEADVRGIKKIGGEQAILSAIPGNVVFMDGGFRGSSTWTYIVATREGKWYSVTASGITNITPGVGANPNVSLSGYSDNINITTSWVGNVFFINDTLRNPMYFLSTATEIALTPDAQWNYTPGSNATRAAFVRNYCSPNVGNILIAGNLTEDLSTGITVNYPTTVRWSQAFANTGIPGTWVPTLTNIANEKEIPVRGPIVDGFFLGANFYVCSYWDTVIFSPIAYTNSTAPVFGVRLFNQGRGLINNNCWTNTDQYVYGVDSRDIWVFDGSSFNPLGNQKVRDYFFANLSQTYSDRIFVVNNTQKNQIEVYYPDLNSTGWCNKMLSWRYDLQVWNAPKDIANATDACEAPRFVGSDFQFASRTVVYAQGSTPNSQLIQTNTGNSFINNAPIPALFERTNINLQTDKGPVPYSAKVYIHRALPEISGTGAINITVGGANSTAQAPVYGQTGQTNIVTDNPWVTTQQNNVRTVSVKVESNDATDTWNLTALNWQANIVEDAF
Ga0209189_100041527	F000857	GGAG	MEDEEVKVNEKYYSEGILEAGVEGVLRKNDKLFNEVKSKNWSQSFSTENINYKVGAVDGERYVQYEQKNVEEVRQFCKERREFHKIHGTDNPFFAGTAHMMQLPKCFAHEISSKWFGNRPWELIKMDKKDKILFYAIVNEYYSDFVCHPSGKIPIPYNPAIPTR
Ga0209189_100041530	F003521	AGGA	MKSLVLNIRSYFNKRTKIKDARKESDVTRRTLVIENGEKANRLMANEDFALMFNLYRFQMLERLEDSKDDNERITNAHYVAGVRDFIYFVEQQEYLGKLAVTPNLKEMS
Ga0209189_100041531	F004695	AGGA	MLDKQNLIVPYIEAPEGNKGIEFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEQDTDQSNQATEMVKYMLNSRNDSYQIIRDWAQDSLLHKNGIVMVAPVREPITQYKEVTGTKDQLRVFETMAGEKGLTAKRQEMKLADVDLQGAMQQAAANGEPTGQQMSEALDKNKVYKAKYKLTGYSTTVRVRHVAQHYFVCNPTISGIQDQDFVGFYDPMTIHECKAQFPFVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIIEVCFSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMSFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFVLDRKFDPNKHVFQFQPLQGNLAYVESSMQRFESDKMAMIGMTSPSDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYIVWKTLIQYSDDYNIQQLAGVCAQGKPFMDAISIENFEFIDRRMINIDMALGFLSDENRLTRQQLIVQAQGAFTQAMMQIDPSVPELFIKARKPYEDTLRVLGVKDVDSYLPTMEEATKIAQAKSQQPPSPEQQEISSKVAVNTAKTEEIAANTALTKRKTQDMDTDDYFEALAAKRGKLSAQEVD
Ga0209189_100041533	F006264	N/A	MEDYAILFRQKLSGQAEVCARKTLETLQKDLQGAKALSPEDIYYLTSAAQILLTMRDFYGKE
Ga0209189_100041534	F001059	AGGA	MATYDIESLKEDLPTAKELAQFVYDKTNISLDLIGKPKADQYLAAKNALEGKKIPAEYISDVNPYVDKKELIPQDELPPLPERPKDLPGVDSRIHFFGATNMPHPLDPQSDRKVQIDFYKYDNGAITYQINGPVEQIAIGERINKYGVKQPERYGWIDPRTEEILLKRPDGTFTEKGRGIYAYCIGEKGGGIWPMIDRNILAHVEKNVTNPWA
Ga0209189_100041539	F012670	AGAAGG	MLDEIRPEGKTVSTEKEKEYARAYYAKKRAEKRAQKLATGQALPKEPKPASHSPGRPKSVVNRVTEYGALFNKLNDEHIAKGFPPLKTAMEVLIEAMQSDELDIKDKAKIADKLAPFESSRAPIISIEHVQNISKEEEVTADDALEDFMESLRKV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209189_1000415

Overview

Ecosystem & Geography

Associated Families

Sequences