NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209189_1000415

Scaffold Ga0209189_1000415


Overview

Basic Information
Taxon OID3300027747 Open in IMG/M
Scaffold IDGa0209189_1000415 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35681
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (70.18%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000857Metagenome / Metatranscriptome858Y
F001059Metagenome / Metatranscriptome790Y
F003521Metagenome / Metatranscriptome481Y
F004695Metagenome427Y
F006264Metagenome / Metatranscriptome377Y
F012214Metagenome282Y
F012670Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0209189_100041523F012214GAGMSDYAKIRTPFVNMSFTPDVPSNALGPNEYNSGKNIEADVRGIKKIGGEQAILSAIPGNVVFMDGGFRGSSTWTYIVATREGKWYSVTASGITNITPGVGANPNVSLSGYSDNINITTSWVGNVFFINDTLRNPMYFLSTATEIALTPDAQWNYTPGSNATRAAFVRNYCSPNVGNILIAGNLTEDLSTGITVNYPTTVRWSQAFANTGIPGTWVPTLTNIANEKEIPVRGPIVDGFFLGANFYVCSYWDTVIFSPIAYTNSTAPVFGVRLFNQGRGLINNNCWTNTDQYVYGVDSRDIWVFDGSSFNPLGNQKVRDYFFANLSQTYSDRIFVVNNTQKNQIEVYYPDLNSTGWCNKMLSWRYDLQVWNAPKDIANATDACEAPRFVGSDFQFASRTVVYAQGSTPNSQLIQTNTGNSFINNAPIPALFERTNINLQTDKGPVPYSAKVYIHRALPEISGTGAINITVGGANSTAQAPVYGQTGQTNIVTDNPWVTTQQNNVRTVSVKVESNDATDTWNLTALNWQANIVEDAF
Ga0209189_100041527F000857GGAGMEDEEVKVNEKYYSEGILEAGVEGVLRKNDKLFNEVKSKNWSQSFSTENINYKVGAVDGERYVQYEQKNVEEVRQFCKERREFHKIHGTDNPFFAGTAHMMQLPKCFAHEISSKWFGNRPWELIKMDKKDKILFYAIVNEYYSDFVCHPSGKIPIPYNPAIPTR
Ga0209189_100041530F003521AGGAMKSLVLNIRSYFNKRTKIKDARKESDVTRRTLVIENGEKANRLMANEDFALMFNLYRFQMLERLEDSKDDNERITNAHYVAGVRDFIYFVEQQEYLGKLAVTPNLKEMS
Ga0209189_100041531F004695AGGAMLDKQNLIVPYIEAPEGNKGIEFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEQDTDQSNQATEMVKYMLNSRNDSYQIIRDWAQDSLLHKNGIVMVAPVREPITQYKEVTGTKDQLRVFETMAGEKGLTAKRQEMKLADVDLQGAMQQAAANGEPTGQQMSEALDKNKVYKAKYKLTGYSTTVRVRHVAQHYFVCNPTISGIQDQDFVGFYDPMTIHECKAQFPFVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVVASAGADRYSRVIMLTTAWIRKDVDGDGEEEIIEVCFSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMSFAMQSSTPRIGVNPEFIDAEEIQRGVSAMFVLDRKFDPNKHVFQFQPLQGNLAYVESSMQRFESDKMAMIGMTSPSDVMNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYIVWKTLIQYSDDYNIQQLAGVCAQGKPFMDAISIENFEFIDRRMINIDMALGFLSDENRLTRQQLIVQAQGAFTQAMMQIDPSVPELFIKARKPYEDTLRVLGVKDVDSYLPTMEEATKIAQAKSQQPPSPEQQEISSKVAVNTAKTEEIAANTALTKRKTQDMDTDDYFEALAAKRGKLSAQEVD
Ga0209189_100041533F006264N/AMEDYAILFRQKLSGQAEVCARKTLETLQKDLQGAKALSPEDIYYLTSAAQILLTMRDFYGKE
Ga0209189_100041534F001059AGGAMATYDIESLKEDLPTAKELAQFVYDKTNISLDLIGKPKADQYLAAKNALEGKKIPAEYISDVNPYVDKKELIPQDELPPLPERPKDLPGVDSRIHFFGATNMPHPLDPQSDRKVQIDFYKYDNGAITYQINGPVEQIAIGERINKYGVKQPERYGWIDPRTEEILLKRPDGTFTEKGRGIYAYCIGEKGGGIWPMIDRNILAHVEKNVTNPWA
Ga0209189_100041539F012670AGAAGGMLDEIRPEGKTVSTEKEKEYARAYYAKKRAEKRAQKLATGQALPKEPKPASHSPGRPKSVVNRVTEYGALFNKLNDEHIAKGFPPLKTAMEVLIEAMQSDELDIKDKAKIADKLAPFESSRAPIISIEHVQNISKEEEVTADDALEDFMESLRKV

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