NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209189_1000554

Scaffold Ga0209189_1000554


Overview

Basic Information
Taxon OID3300027747 Open in IMG/M
Scaffold IDGa0209189_1000554 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30904
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (78.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055425Metagenome / Metatranscriptome138N
F057197Metagenome / Metatranscriptome136Y
F073241Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0209189_100055418F073241GAGGMIHIMKDDNGDFEPLDLTPVFYKGNLMCVPHWRIKNTWVFPGGKTYTTAELLALGAKVSLSLLWQRGWVTKMLGRHNPAMLSQESLTNLIKGKANAL
Ga0209189_100055427F057197AGGMTDFGAWRYENLVQFAKESTERMNLLNAEIDALNADLKAAINAYRDLLRRDSLGFLKATHPAEAQKTGE
Ga0209189_100055439F055425N/AMITDNEKLASTVMNAYFRELEIYSYQVNIDNYSAMLLAFPSGDWPQDWVAFKGVKIDELPHSLSDDEAQAISDYQYRDRLRSLIRTERAEQSKTIRIRDVLKAQIGDSYDAQILAYKATQ
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