 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027747 Open in IMG/M |
| Scaffold ID | Ga0209189_1001835 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15449 |
| Total Scaffold Genes | 42 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 38 (90.48%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Croche, Canada | |||||||
| Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000325 | Metagenome / Metatranscriptome | 1296 | Y |
| F008812 | Metagenome / Metatranscriptome | 327 | Y |
| F012108 | Metagenome / Metatranscriptome | 283 | Y |
| F043359 | Metagenome / Metatranscriptome | 156 | Y |
| F059898 | Metagenome / Metatranscriptome | 133 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209189_100183511 | F000325 | GGAG | MKVANGNDKLGKGCLVVSRPVGDTCPSSCAFLGDGCYAEQTEKMYPNVRPAGMQNLITERGRIRAMILDAMRQGKSIRWHERGDWFLNGELDLDYVANVTWACESILAEGKTLPDMWFYTHIYDSRLVSFEKYMNVYASIHNDTDMGEALSQGFKLFAWCDSDQKIAPKRPKRKAAAEAWRKSLPKLVVLNGTKFVTCPEIRRGRGVVTCTPTKGSVSCDMCVRGLANVLFPSH |
| Ga0209189_100183529 | F043359 | AGG | MEWNNSHKNPPAVGQRVYYFGPNIGIGIGYYSYHPDRKIETYYYNENNEKVVDKEIEICQHVFTNQAKPWTCDACDAPFWLPYDEERAKSWCPIIPEEYTKGLYD |
| Ga0209189_100183530 | F059898 | AGG | MTDDREKAMIYILSFFKSRMAAVNKHNVDKTKELISTHQITMNELVDRYVELVYENS |
| Ga0209189_100183532 | F012108 | GGAGG | MIKIDLSVREAMYLATNWAYNNDADLYHKIVNSLEAALGVNQNRVVTITSGMNTDNRIPCIKAIRMHTGWGLKEAKDWTDSLVGGWNYDKWVPAPSGTKQSVTLKTPEAAENLLRDLTGLGCEGYLS |
| Ga0209189_100183539 | F008812 | AGGA | MIQWIGALVAVIGLLYTGVKDYQHGDISFPKIKQKELTKPKHPIQYCLMAYDPNLNKVFYLHENGQWHDYAPQQRRYETTPQGVQDQGKETVGTVYGTQRESNGYYYGQQAQAYANTQR |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |