Basic Information | |
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Taxon OID | 3300027747 Open in IMG/M |
Scaffold ID | Ga0209189_1002292 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13488 |
Total Scaffold Genes | 48 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (85.42%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → unclassified Pseudoalteromonas → Pseudoalteromonas sp. | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 3 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F035281 | Metagenome / Metatranscriptome | 172 | Y |
F036210 | Metagenome / Metatranscriptome | 170 | Y |
F043902 | Metagenome / Metatranscriptome | 155 | Y |
F061803 | Metagenome / Metatranscriptome | 131 | Y |
F085623 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209189_100229212 | F085623 | AGG | MTLLRTLILEYDIVEIHYNELLKNKPYLIRVFSYNNSDPTELRVDENQVNNLYQTLKEYYLL |
Ga0209189_10022922 | F043902 | GGAG | MTIQQLRNSGYKVRVLHNRLYNGYYKWQVGSKPSGEQGYGPIDPDTKGGSTQIIIDGPSGDHYDGLAICSKKENYNKKLGVRIALGRCNIDKTFYVRAEATNE |
Ga0209189_100229234 | F035281 | AGGAG | MIKFVLVFALMVLGSSTYAGECANGHCTLRSRVVNVTQEIVAVPVAVTRRTVEATRNVGRRTVARVRSVVR |
Ga0209189_100229237 | F036210 | GAGG | MKSRFIGSDNRIEIQRKYIDQILGELDFMQIKDRLRDYLSKEKDKESNYSLEAEIRKEAPEVLVDNWEGFDGPTTLTDGGYHHV |
Ga0209189_100229239 | F061803 | AGGAG | MEIEFSKQEAWKILDAISAYKKDYTVTGAVSKTFDNITKKLKKVVKE |
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