NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209189_1004806

Scaffold Ga0209189_1004806


Overview

Basic Information
Taxon OID3300027747 Open in IMG/M
Scaffold IDGa0209189_1004806 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8678
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (37.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011914Metagenome / Metatranscriptome285Y
F025679Metagenome / Metatranscriptome200Y
F026210Metagenome / Metatranscriptome198Y
F032572Metagenome / Metatranscriptome179N
F035215Metagenome / Metatranscriptome172N
F066486Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209189_100480610F032572GAGMEIKNTYQYIENYISKPTYFCYVVDRVINTNPYLFSGEYNKKLINKKVWMAKQVYPMCMPEQYTYFKTLKELKTSLNRWGASWVRA
Ga0209189_100480619F011914AGGAMITSYQIKALDENELAYLYYCCKSEWDSKNMGYDFDWYILKAFKNNTIHPILNKYSDNLTDENKPLIMQILNKLEQNK
Ga0209189_100480626F026210GGAGMSPILGANPLDYDAKYPQTADTSVNEDAKMFVMERNTAKEVMFQIEDGTQFYGKISSVPNSEHYCVVVDRNGTPWEWYVREQATRFVENTIK
Ga0209189_100480627F066486N/AMKNKTLSKNDPYYLKIGKFKKKTIYDAKVDMSDQMENTFESLGREHITKEQYINIGFNYALIKGLGEIKNKKNGDKR
Ga0209189_10048063F035215N/AMRRMKMKLRSQIVKEISDRIVEYKTLQVEHDNSQDAVNLLESAIDELENLLEWINE
Ga0209189_10048065F025679N/AMTKTFKIGEYAVGGKIKVSIPKTLTNIKIDVIDSNFGTGQLVNQYIYYSFDRIRIERDLFQIVSGYWSDQILKWIISKWQIEVAENLI

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