Basic Information | |
---|---|
Taxon OID | 3300027747 Open in IMG/M |
Scaffold ID | Ga0209189_1004806 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 8678 |
Total Scaffold Genes | 32 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (37.50%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 3 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F011914 | Metagenome / Metatranscriptome | 285 | Y |
F025679 | Metagenome / Metatranscriptome | 200 | Y |
F026210 | Metagenome / Metatranscriptome | 198 | Y |
F032572 | Metagenome / Metatranscriptome | 179 | N |
F035215 | Metagenome / Metatranscriptome | 172 | N |
F066486 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209189_100480610 | F032572 | GAG | MEIKNTYQYIENYISKPTYFCYVVDRVINTNPYLFSGEYNKKLINKKVWMAKQVYPMCMPEQYTYFKTLKELKTSLNRWGASWVRA |
Ga0209189_100480619 | F011914 | AGGA | MITSYQIKALDENELAYLYYCCKSEWDSKNMGYDFDWYILKAFKNNTIHPILNKYSDNLTDENKPLIMQILNKLEQNK |
Ga0209189_100480626 | F026210 | GGAG | MSPILGANPLDYDAKYPQTADTSVNEDAKMFVMERNTAKEVMFQIEDGTQFYGKISSVPNSEHYCVVVDRNGTPWEWYVREQATRFVENTIK |
Ga0209189_100480627 | F066486 | N/A | MKNKTLSKNDPYYLKIGKFKKKTIYDAKVDMSDQMENTFESLGREHITKEQYINIGFNYALIKGLGEIKNKKNGDKR |
Ga0209189_10048063 | F035215 | N/A | MRRMKMKLRSQIVKEISDRIVEYKTLQVEHDNSQDAVNLLESAIDELENLLEWINE |
Ga0209189_10048065 | F025679 | N/A | MTKTFKIGEYAVGGKIKVSIPKTLTNIKIDVIDSNFGTGQLVNQYIYYSFDRIRIERDLFQIVSGYWSDQILKWIISKWQIEVAENLI |
⦗Top⦘ |