NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209189_1021136

Scaffold Ga0209189_1021136


Overview

Basic Information
Taxon OID3300027747 Open in IMG/M
Scaffold IDGa0209189_1021136 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3486
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F032536Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F048123Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0209189_10211362F034827N/AMKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL
Ga0209189_10211363F048123GAGMEQMKPRYDFNKGKLISYDGEIIEFASSALADKYSDQVEEIMRLLNLKKGQYLITDESTIGDFGKETINKVLLEKFKKKYGFSLTNNSNISKIAERMYNFRPF
Ga0209189_10211366F032536N/AMSQKQTFEELMRSFRFHKNPILNWVLGNNNYLYHTFLNTKWKVKNVLQKLTRGFSDSDCWNLPQSTAKFLLPRMKHLRQNYHSLANRHHLLIDGKIVPYVGKEDNYEFDEKLGCYTDKTTGLGLSLDEKEYEYILDEIIFALQMIVDEDDINFSLEEIYEVYPKGFDPIKDRQMFLTKQDSGDYLVEFEQKENIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD
Ga0209189_10211368F024040GAGGMNVYVTGHNWLAKVDIDTKVVGKNDWYNEACTRAVESVLDQEEKEGVELKIQDYDDFGLGVILLTYLEKDIKKEGEHRVLLTSNVLANAGRWEEYKFVKDYEEKAKEEGL
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Institute for Fundamental Biomedical Research
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