NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209189_1023113

Scaffold Ga0209189_1023113


Overview

Basic Information
Taxon OID3300027747 Open in IMG/M
Scaffold IDGa0209189_1023113 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3298
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000857Metagenome / Metatranscriptome858Y
F018879Metagenome / Metatranscriptome232N

Sequences

Protein IDFamilyRBSSequence
Ga0209189_10231131F018879N/AINRFNPADKGDTIGTYEGDFNYTYQIDDSWVMDQTGSDNTSALFMNPDVIQWGSLRELGPNNEVFSNADASLDQYIMEGTLIVRNPAGVGVLAAISPTGAAVTGPRPSAQVKRYLA
Ga0209189_10231132F000857GGAGMELNLNNEEARINEDYYTKGNLGAGIEGLLIKNDKMFNEVKSGTWSQTFNTRNIDYKIGAIDGARYVQYDQKNVEAIKQGCKEKREFYKEHGTDNPFFAGTFHAMELPKCFAHEISSKWFSNRPWELIKQVKEDKILFYAIVNEYYSDFVCHPSGKIPLPYNPAIPTK
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