NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209189_1025789

Scaffold Ga0209189_1025789


Overview

Basic Information
Taxon OID3300027747 Open in IMG/M
Scaffold IDGa0209189_1025789 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3085
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016772Metagenome / Metatranscriptome244Y
F032917Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0209189_10257892F016772N/AMNKFLPFILIPFLVAGCATNNTGGDANVGGTTPKQAVENALPYIAPAVTLACTVVLEQALSPEDRVQKARMINNVAAIVESLTNGNTPTPDQLQKALTDYLPQDKTHWAKYVVVVKDIYAAQFAKLNGDAKLGVDVLNAIAKGCKTATEQYVN
Ga0209189_10257894F032917AGGAGMLKKLAIYSLSSLLLCSCTTVTPDKVQDEIASYDASTPTAYDAQNSGFIGFLDDGRGIITPFGLLRYNTLIKTYKIRFKSFKGVELSENDGINEFTDKLNNKLYIIDQQHLVYYAILNSWRKDGKEPDSIWDKAKELVK
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