NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209189_1099001

Scaffold Ga0209189_1099001


Overview

Basic Information
Taxon OID3300027747 Open in IMG/M
Scaffold IDGa0209189_1099001 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1309
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013889Metagenome / Metatranscriptome267Y
F072274Metagenome / Metatranscriptome121Y
F085130Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209189_10990014F072274N/AMNTDGYISSDGTWAAVPWYGKKYISIYNGEQICVHHSLETAKKFIQKETRKQ
Ga0209189_10990016F085130GGAMTSYYFWFGIFIFVGYLIVTDNSVAHAFLLVLKFIKFQYEKQKWWLLHNPKNPIVKWIMWRKALRMAKELENELNM
Ga0209189_10990017F013889N/AMSRTNRNLEGMHRGALRFPHTFNEIKQLDAILHEEDLEGLPISGLNHMKAREHQLPTAWDDRVVSGYYQEDYET
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