NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209189_1140499

Scaffold Ga0209189_1140499


Overview

Basic Information
Taxon OID3300027747 Open in IMG/M
Scaffold IDGa0209189_1140499 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1041
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021232Metagenome219N
F048063Metagenome148N
F098551Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209189_11404991F021232N/ASDTVYCTAESYDLANEIIAADGLVDAVIQQVNHITSIEEGNPVTISYENTSTYDCTSDDVNDKCHKDHY
Ga0209189_11404992F098551AGGAMNNTNTEYNVGDDVSYHINNDSYYAGKIIRMTKKYIFTESGKKFTKIGNNYRMTGSQYCWMSLGRKEKQDPHF
Ga0209189_11404993F048063AGGAMSIILTCNVTGKTVKWSNQSIIDAKIKEYGSLEAFQKAYVSRGAVKKPKVKSMLLRDGEVDLMKSILEEGVKLAPPGLSTKHLTAEQYAAHYQKKVDALVAAGASSAEINWMKQRLDRWRNGA
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