NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209689_1318236

Scaffold Ga0209689_1318236


Overview

Basic Information
Taxon OID3300027748 Open in IMG/M
Scaffold IDGa0209689_1318236 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)599
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032975Metagenome178N
F098987Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209689_13182361F098987N/AMIGEVAFGVIGLLLLLADIRIFASTFQQTFYGTSSTQLA
Ga0209689_13182362F032975N/ALMTRCAEIGLPTTFLVGVDPAAGLLRGELISASPAARELDYALGVSVGRFTIELADRFNAIARACREGRIVTSMTLDEVIHPLRDADGAATLERLVQGGRTTILPISVSGDVVGALVVGPMADEPGFSTVVKVRDIVNETASRLAEVWQTGR

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