NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1002109

Scaffold Ga0209084_1002109


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1002109 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15824
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (89.58%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000354Metagenome / Metatranscriptome1244Y
F014848Metagenome / Metatranscriptome259Y
F018539Metagenome234Y

Sequences

Protein IDFamilyRBSSequence
Ga0209084_100210910F000354GGAGMTKVNYDGFASFDLNEACDHFDCTDQKAWKKIRPFIVADGEEYMEVMEKEFDFEGVTGSDHAVFEAGVKYALTKMNIALDKAGIDVQVCEVDLVESMGFMLVRCDDEPEDFVKRVMKKPVVMVDSWV
Ga0209084_100210939F014848AGGAMTRYYDTLAEYERDGYTIIVDKTYEDIHPSDLFDDSEHDVKQLCQDIECGNLDWFMLRVRVLVEGLELAEEFLGGCLYTDAREVLSDGCAEDIIDQAMTHAQGRVYALSRKFTELSYAHDAVPANEQY
Ga0209084_100210947F018539AGGAGMLSNAFNTLAKAKLVYNKKRELYKLVVAFNVHTKQKDNGDIVHIFPTQAKCAYVSGDIIYEELQAEVNRLTETAKKQLRTNNIEFV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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