NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209192_10000583

Scaffold Ga0209192_10000583


Overview

Basic Information
Taxon OID3300027752 Open in IMG/M
Scaffold IDGa0209192_10000583 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34720
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072835Metagenome / Metatranscriptome121Y
F085330Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0209192_1000058318F072835AGGAMALPATGSTISMGVIRNYFVSAEGGSRASSYTISVLGTYIGISAGTTILMSTSFGGYYFWDSASLGD
Ga0209192_1000058319F085330AGGAGMKTLYEVLNVDLVNEYTKARKKAAVEDCGLPAELYSEVFEAINAMDIPEDDERMHWVQKLGRTAGVDLLTIGKVQPENMLAMASLPADDFKEAVKVATSAARNWNTLTQAAEKELNEETIPSTML

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