NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209192_10003311

Scaffold Ga0209192_10003311


Overview

Basic Information
Taxon OID3300027752 Open in IMG/M
Scaffold IDGa0209192_10003311 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10916
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F000681Metagenome / Metatranscriptome939Y

Sequences

Protein IDFamilyRBSSequence
Ga0209192_1000331119F000681AGGAGMYKRDKHYNEKISKVDLEIEISKHYKNEHGLVIQLMSNCVQDDMIETRHELSCANEELWSLNDWPEGEGFGSSDRHSYIDRVKESIAFERKFLQAETELISINKLEESPKNDDVRSYMRMNEKLTEGLVA
Ga0209192_1000331130F000379N/AHGMMVGYIDGSQNVSAVQTGWDMTPEALSKLLLDKYPTKEDAMTVVDSPLLVPVFKKDDYCYVDEFGDVIESNLSWNKEVMRKDIGHLFLFMKGTWQYSDNGIDWTPAIEEFVDTSGVAVESIREALEMEKA
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Institute for Fundamental Biomedical Research
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