NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209192_10020513

Scaffold Ga0209192_10020513


Overview

Basic Information
Taxon OID3300027752 Open in IMG/M
Scaffold IDGa0209192_10020513 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3302
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000918Metagenome / Metatranscriptome834Y
F008577Metagenome / Metatranscriptome331Y
F023446Metagenome / Metatranscriptome210Y
F093896Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209192_1002051313F000918N/AMRYLTNNEAWDEVSREFTESKRRTKVCQSLFGQDNLIGLNDEQRDLFWKSI
Ga0209192_100205135F008577N/AMNLTWEEIKEIANRLDEIVGMNFHDAMYNVIWERESDEEVEVSDEDIIAIKEQLKRIL
Ga0209192_100205138F023446N/AMSKNVEFIDQLCELMGGDRFFLCDQYCQDDLFEMQDKIANHIANNANEGLGLAKYMVNKFPSTFKTEQV
Ga0209192_100205139F093896N/AMTLTNSEKNILLVSLDHMKEHLFIIYEAGDITLDTFNLRMETWKTVYNKIKQQ
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