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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027754 Open in IMG/M |
| Scaffold ID | Ga0209596_1000214 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 52945 |
| Total Scaffold Genes | 80 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 71 (88.75%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001538 | Metagenome / Metatranscriptome | 674 | Y |
| F005234 | Metagenome / Metatranscriptome | 407 | Y |
| F006110 | Metagenome | 381 | Y |
| F034467 | Metagenome | 174 | Y |
| F034855 | Metagenome / Metatranscriptome | 173 | Y |
| F047558 | Metagenome | 149 | N |
| F049487 | Metagenome | 146 | Y |
| F070994 | Metagenome | 122 | Y |
| F075680 | Metagenome | 118 | Y |
| F080867 | Metagenome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209596_100021419 | F034855 | GGAG | MDTRMESALALADKCWSKANRTSPEFVERYLELAEELLVSKPVVLGDEFREYCGKKLLFRPKELHPNVWVSGVRTLSTLGWIAHNGYTTPTKSHNHMPSVSVWKSMIYGNDT |
| Ga0209596_100021421 | F006110 | AGGAG | MPRPKPPEPLIGRQIRLSDRQFHILNHFGGAEWLRDLLDKKDPFPKQYYERLKDDDRNRESKTGTTTQGAGVR |
| Ga0209596_100021424 | F034467 | AGGAG | MKEEMKYQSKAIPLRGCNDPKFKWVSAASTDIRRTFRKARLLIRITNGAAYESRT |
| Ga0209596_100021425 | F080867 | AGGAG | MSMNTLSLSNIVVGEDLQKSLDKEGLKLTGVYPMLDPVVSRLASLNPLWTFVINNSGMHMGSARVAAGFIVKLDGEELGSIGLSYMGQRGKVIAICNDRIGKGRQRSDSYRTVDADKAILMAKKMFGKMNPNERIQKAKDAAERVVSRASWNKERERTQHQSLVKNEMLAWAETKGHALFLEYLKAEAIPSLKHKVTTSMEKVELLDTEMKTIEKVQEDFSNNKTALVVKDTGKYLVRIGDKVDLYDDNTLPVDMRMKMGMLKLVEDEQYLTDVGCKVTSEIFVLLVDELTNVSEGV |
| Ga0209596_100021429 | F075680 | AGGAG | MGYRSDVMAVFYTYDPNEFPSIKLFIDENIPEWFRGDEYMSTFTKANLMGIKFSLEDVKWYPSYPDVHGFEQAIEKFEKLSDGGHAWLWEFVRLGEEVEDVEDRHSYQADGLLHVVRSIECDF |
| Ga0209596_100021430 | F070994 | GAG | MLGLNGMTATDFKRYIVRWVTDHIKNESGTAQIQVLGYCVYDTKECKTLFEHKDKQVCEKVLAMVLEGVDHGIQK |
| Ga0209596_100021436 | F049487 | GGAG | MPKRKKKFMLLRSSHGSFIVVERRWYDFAGIARVQGKHKMWWIVAESDDHGAMHAMAGLTDKHVKMGVYHEQDGIVTRRE |
| Ga0209596_100021455 | F005234 | AGGAG | MQTDVKSGAAAANATTTIFAGPARIKGISISYSTGATVVLNDGTSGTAMFSFTAPAAAGSIYMMFPGEGIKCSTNISAVVSATTTAVVFYG |
| Ga0209596_100021476 | F001538 | N/A | MIDTIKLFPTVQPSGYPDKHDLAQKKLERQHEVNKANELAKQKQTQLQDIGFEIYCKKSVQERLRIEIFQNRKLDVYV |
| Ga0209596_100021477 | F047558 | GGA | MVTKKLPAKVAPVKRTTPKPKVEAPKPEAKKDDSTVGKVIGLIEWVDNPFKLFTVILLSFLFFAGYFAWDSRTVILNAITSSSHQPQLKEIKVLEHVAERLKKDLEAETVLVHKVALVVNSRITLLAYGPKGRETTLDGYNSTLFGKDAARNSAVIAMMNGEVYCDKLVATGKTSEWEEKQGVNFICRGSIPPEMGAFEGYVSVGFTKEPQDLGAVKTRINLASTEMAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |