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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027754 Open in IMG/M |
| Scaffold ID | Ga0209596_1000317 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 45444 |
| Total Scaffold Genes | 70 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 59 (84.29%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005703 | Metagenome / Metatranscriptome | 392 | Y |
| F008072 | Metagenome / Metatranscriptome | 339 | Y |
| F009735 | Metagenome / Metatranscriptome | 313 | Y |
| F016782 | Metagenome / Metatranscriptome | 244 | Y |
| F017814 | Metagenome / Metatranscriptome | 238 | Y |
| F020318 | Metagenome / Metatranscriptome | 224 | Y |
| F031763 | Metagenome | 181 | Y |
| F042732 | Metagenome | 157 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209596_100031711 | F020318 | AGGAG | MSAELVSSESFEEWKHHPVTKRFMKMLTTDRESMKEGLINNAFEEEAEIKGRCRVIAVILNIEYEDLFEAK |
| Ga0209596_100031726 | F042732 | GGA | MSSAYTVTRDQIITLALRKLGVLEIGSTPDADTISNASMSFNLLIKQLSTEGLKLWKICELIIPLTSNQPTYTLGGSGSALMYDSLSPTVVITDRPLKVIQGFYRNIQTTPYIDTPVMVMSKQEYNTLGSKYSTGTANTIFYDPRKLNGILYVYLTPDINAQTNIQLHIVAQMPLDDLSTALDVPDFPNEWMNCLVWNLADQLSLEYGVPMNARQEITQRAVAYKALLVDWDVEASSTFFQPDFRSSSNNSYGR |
| Ga0209596_100031735 | F005703 | GGAGG | VGWIAACVLIAVLLPLLGLLYSDILEVKQESKAQIEKIEKLRRQIESQQREKSK |
| Ga0209596_100031743 | F031763 | AGGA | MKLYGYVWTKDKHEPKFFWTEQPAREIQKSFGGEVVAVYK |
| Ga0209596_100031752 | F009735 | N/A | MTMQTGIVEAVSTKDVSTKFGTKPTFSMKVGGTWIKCGFKNPNVAVGYEVEFDGVTGTYGVETKSVNILRKADAAPTPSGATTAPAVAAPKAAYSGYKEKVFPIPALHGDRAIVRQNALARATDLYIAARGGKPFELELSTLDLVVTLARKFEAYTAGDIDMQEAMEETTAEQLP |
| Ga0209596_100031760 | F016782 | GAG | MLPVREKQMDAHMMSTLYAAATESLVSDASATSTFEKMIAVAFTHSSVDTFAKDLRDTEKQIKKDYEVSSMPGPWRSAKSVIHTAMKLSIKLIDDNGSYCGKTFLQNKIKELKIPKEETSAEDYANKVIRNLMNVPEGMDALKVFKLVKEFVNASGK |
| Ga0209596_100031768 | F017814 | AGGAG | MAQQNDFDFNAFNNLTERKPAGLQIFLAQQLLSNALWSMEKFDNPRGSDVSSIVTDIKVLRELLKQDTAARASK |
| Ga0209596_10003178 | F008072 | AGG | MQRRISRDKRYKKSVWSQNQRLQAVSTYLMLGNMAETAIVTGIPLPTLKLWKQMDWFKEFSLQLKTEDVQQLDSNLKRVINKALKATEERIDFGDAQFDQRTGDIVRVPIKAHVALKITTDLLAKQQKLEENPIDREEVEKTIDERLLKLSAEFARFAGNKTQAAVAIDVEAKVVSNV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |