Scaffold Ga0209596

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1000389 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027754 Open in IMG/M

Scaffold ID

Ga0209596_1000389 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40870
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (68.63%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

40870

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (68.63%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)	Depth (m)	8
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Montjoie, Canada

Coordinates

Lat. (^o)

45.4091

Long. (^o)

-72.0994

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F011148	Metagenome / Metatranscriptome	294	Y
F022814	Metagenome	212	Y
F024029	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_100038916	F000934	AGTAGG	MSLTNILSISESVGINDQRFVGQVVSRNQRISTSEIITVVPFAFEMKPMNYLLYSQNRALLNSLRIPDKSLDQYLNFGSTGWINYIAYQGDMTSGQITSAQWQTSSANKTLVLGNLPNNTAMPSNLYVVKQGDFCQVGLYAYIATADVLRGSGSTVVIPVHRNLIATLATPVNAVIGQFGTTVSMGGNTYTGTTFQVVLREYPTYTLIPMTNDSFIEWSGTFKAFESVL
Ga0209596_100038917	F002085	N/A	MEIIEPVENTNNIRYADFVRVTTPDATYRFATTASALTISAVDAQPFSALGVLMRVGDTQRDIKSTANETTFTMVGIDTAMLGWVLGNQIKGSKIEAWKGFFNTDGALITTGGQGGLYQFFNGYVNSFAIQETWMEEVRQFVGVISVSASSIQLILQNRTAGRYTNDNNWQYFTPGDTSMNRVSFITNINYEFGKGALSTS
Ga0209596_100038922	F011148	GGAG	MAVFNKNTLTQVSGFDNQIIAGELVWQQKTFWNLALNADDGLPLDLTNATIEAEIIRRTLTNVRDSRYGLAFDIGNYDPTPAAINLTITNVVGANGSFTLVIDSDAWDLIEGQVGLDIANINGVGYSGRIKISFPVEGTTPANDLIIFLLFLVRSDAIVNN
Ga0209596_100038933	F022814	N/A	MPLPEEVEFIVSPDPDTMGTYTLDMGGDYEHTVTISSARCGHLYTALTTIAHEAVHISFHKQKGDKWLHHGKEFRRRCKMVADELGFDGLEL
Ga0209596_100038935	F024029	AGGA	MNEHIWTASGTDIEERWRLHGWIRPSDQPEYQAKWKHFQELPMRKLDDVAKVKYEEVLRKAKVLRIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209596_1000389

Overview

Ecosystem & Geography

Associated Families

Sequences