NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1001143

Scaffold Ga0209596_1001143


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1001143 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23372
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (59.32%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F002387Metagenome / Metatranscriptome565Y
F007468Metagenome / Metatranscriptome350Y
F007921Metagenome / Metatranscriptome342Y
F019321Metagenome / Metatranscriptome230Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10011431F019321N/ALHNGRQSQKQVNLYLSKIDTVKDIITEAYADSDDQETLRSIAEALDIALTRDVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVDSQNGNIEIVDQEVTNVREN
Ga0209596_100114312F000441AGGAGGMRMSDAYLNAQLDTAQKLLWGGSETENIEAHNIISKLIYDRIEQTE
Ga0209596_100114326F007921N/AMIDWLVNRIFRWDPLRKAVFDEVHMYDGLAKRIEKYKDEKPTNLAWSEGDTWYGWTYNSNAKRYYFDDIGNTSLMGLWEEQWLHETDKSEV
Ga0209596_10011437F002387GAGGMASFLEDVNQMVIDAVYQDISEQLLEDWINSNLDEGQYYADKQFAEMSGDKFIQDEFNKFYDIKEGDEGYLC
Ga0209596_10011439F007468AGGAGMTKSSHFIEYMKIHLISLNQDLEMNPESINVIDIPGQIMATEHLLSVATDIMNNNERVY
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Institute for Fundamental Biomedical Research
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