NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1003083

Scaffold Ga0209596_1003083


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1003083 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13325
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003541Metagenome / Metatranscriptome480Y
F005742Metagenome / Metatranscriptome391Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100308312F005742N/AMKVTGLKNIMKEVNEPNEFELFADNLQHPYYWIFKVDNVRIKTLSPQVEKLRTPTARFDVFVNGLFISENDYVYDHNGNNFYIKFIKTKFPDFDRFGNVYEIDETDEVKINGDLEKFAI
Ga0209596_100308314F003541AGCAGMARLIPRKQIEEQQNISASLNIRENIYVGQDAIISGSLFVSQSFFFGNNLNERNEITGSVFLTGSLTIDGELKTGAPNTILSVTSSNALVSVDTQRYAGILAK
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