Basic Information | |
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Taxon OID | 3300027754 Open in IMG/M |
Scaffold ID | Ga0209596_1005728 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9114 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (40.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001923 | Metagenome / Metatranscriptome | 617 | Y |
F003583 | Metagenome / Metatranscriptome | 478 | Y |
F021107 | Metagenome / Metatranscriptome | 220 | Y |
F021297 | Metagenome / Metatranscriptome | 219 | Y |
F028807 | Metagenome / Metatranscriptome | 190 | Y |
F092032 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209596_100572815 | F092032 | AGCAGG | MSEVNTGTVCLYGIGPGQQANLFVQSYTVASSFNNTGMVVDESGRTVTGRYDDRRSEISIEGVAKATSIPLLGAKLEFTAKTASAYPGGTASVSFAGVITKVDDRGTSKGFVTVSITAESFEEIAY |
Ga0209596_10057282 | F003583 | N/A | MAKAKPQAKQSGSANLLLAVTLLTGFAGVAALSSAYISGYVLDTLQSRDALVMIVTDAGIKSDSATVEQGLSAATLALKAVRDLGWALAVGCLGVGVAVFLRSRRQKA |
Ga0209596_10057283 | F001923 | N/A | MSPPPPPIDPESFPKELKDGVIASILGGLAMTARLLLSQEPVSVGWVVRRVLAAAITAALVGYAIADHIQSPGLRMGVVGAAGYAAPECLDYLMRYIKNKGDAEVGPAAKKPNGKSKAPGKAKRKR |
Ga0209596_10057286 | F021107 | N/A | MITLLLIVVAFAGGFIAGIKNAKSAKVEKAVDILKALKGK |
Ga0209596_10057287 | F028807 | N/A | MITYKISMSGAMLADPYALLRAVFPQWNGEPANANSGYVTVTFDTPQTPADLGTLVKVEVIPNP |
Ga0209596_10057289 | F021297 | AGGA | MSCSNTVTISQGNTFACTFDWTPGASGPANLLGTTLSSDFEDRSGKIYALTVTTANDGLSFTVEYVGSTSAWEVGLGRWDIKFIFPGDTISRTEIFRVNVIDSVTV |
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