NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1005728

Scaffold Ga0209596_1005728


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1005728 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9114
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (40.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001923Metagenome / Metatranscriptome617Y
F003583Metagenome / Metatranscriptome478Y
F021107Metagenome / Metatranscriptome220Y
F021297Metagenome / Metatranscriptome219Y
F028807Metagenome / Metatranscriptome190Y
F092032Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209596_100572815F092032AGCAGGMSEVNTGTVCLYGIGPGQQANLFVQSYTVASSFNNTGMVVDESGRTVTGRYDDRRSEISIEGVAKATSIPLLGAKLEFTAKTASAYPGGTASVSFAGVITKVDDRGTSKGFVTVSITAESFEEIAY
Ga0209596_10057282F003583N/AMAKAKPQAKQSGSANLLLAVTLLTGFAGVAALSSAYISGYVLDTLQSRDALVMIVTDAGIKSDSATVEQGLSAATLALKAVRDLGWALAVGCLGVGVAVFLRSRRQKA
Ga0209596_10057283F001923N/AMSPPPPPIDPESFPKELKDGVIASILGGLAMTARLLLSQEPVSVGWVVRRVLAAAITAALVGYAIADHIQSPGLRMGVVGAAGYAAPECLDYLMRYIKNKGDAEVGPAAKKPNGKSKAPGKAKRKR
Ga0209596_10057286F021107N/AMITLLLIVVAFAGGFIAGIKNAKSAKVEKAVDILKALKGK
Ga0209596_10057287F028807N/AMITYKISMSGAMLADPYALLRAVFPQWNGEPANANSGYVTVTFDTPQTPADLGTLVKVEVIPNP
Ga0209596_10057289F021297AGGAMSCSNTVTISQGNTFACTFDWTPGASGPANLLGTTLSSDFEDRSGKIYALTVTTANDGLSFTVEYVGSTSAWEVGLGRWDIKFIFPGDTISRTEIFRVNVIDSVTV

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