Scaffold Ga0209596_1022858

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209596_1022858

Scaffold Ga0209596_1022858

Overview

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1022858 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3697
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000903	Metagenome / Metatranscriptome	843	Y
F003182	Metagenome / Metatranscriptome	502	Y
F009883	Metagenome / Metatranscriptome	311	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_10228582	F003182	AGGAG	MHILLFDCSICAKLFGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIEELADGNL
Ga0209596_10228583	F000903	GAG	MITHLDEVLCMVKAIQHCTDRSADHPMRFQRSLSWFEYVAQMAESMAAEWVVARTLGYDYEPGITWDKSKADVGNNIEVKWSPNPDGNLWIQDSDRHDRDIAVLVTGQQAKMKIIGWIPVAIAKKPRYRNTAQNNWSVPQINLQPIETLQRSIHAHPVI
Ga0209596_10228586	F009883	GGAG	MNEATIVIAMVIAGALWAVMAYSVGFKEGERQGYSRGRAISRHASSQVKS

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