NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209596_1024580

Scaffold Ga0209596_1024580


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1024580 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3524
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039993Metagenome / Metatranscriptome162Y
F039994Metagenome162N
F057984Metagenome / Metatranscriptome135N
F091592Metagenome107N
F102824Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10245802F039994GGAMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDRPVYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVARALFAWMQLKKGLPRL
Ga0209596_10245804F039993N/AMKLALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSYLDDKGVIWKDVK
Ga0209596_10245806F102824N/AMTPVRVQPEEGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFEDKAKAQDAADLWNAYALWCQERSGKRKRR
Ga0209596_10245807F091592GGAMISAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRVTKNQIGRLSDCNCYRDAKEVRSLVRDIKNGTVLFWCKVAGVRIDQATLNRVIKRGVGNVS
Ga0209596_10245808F057984GGAMRNHDSNHSVSGGLSILALGPREKGKINMDGLGKIQILAERKVEMVELDIDVDDKTRDTVCHAALREITSDGDALFNYGFNQAIKRFIQTKGKKCTKKSLSKKRSRR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.