Basic Information | |
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Taxon OID | 3300027754 Open in IMG/M |
Scaffold ID | Ga0209596_1024580 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3524 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 8 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F039993 | Metagenome / Metatranscriptome | 162 | Y |
F039994 | Metagenome | 162 | N |
F057984 | Metagenome / Metatranscriptome | 135 | N |
F091592 | Metagenome | 107 | N |
F102824 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209596_10245802 | F039994 | GGA | MENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDRPVYDYHITRCIKHAVTAQQQIHLNHPNPDEAGENALDHLERAVARALFAWMQLKKGLPRL |
Ga0209596_10245804 | F039993 | N/A | MKLALSWLLYHIGDILSYGVSRYGYGYSLYNKIMLLSSYLDDKGVIWKDVK |
Ga0209596_10245806 | F102824 | N/A | MTPVRVQPEEGKWRVTTMAGNPIGPRLWGAVPPNGLPSIEDLFEDKAKAQDAADLWNAYALWCQERSGKRKRR |
Ga0209596_10245807 | F091592 | GGA | MISAQFTRGDEDDRIKQLAGEVAIRAMQDIKLLQRRGVLDGLRVTKNQIGRLSDCNCYRDAKEVRSLVRDIKNGTVLFWCKVAGVRIDQATLNRVIKRGVGNVS |
Ga0209596_10245808 | F057984 | GGA | MRNHDSNHSVSGGLSILALGPREKGKINMDGLGKIQILAERKVEMVELDIDVDDKTRDTVCHAALREITSDGDALFNYGFNQAIKRFIQTKGKKCTKKSLSKKRSRR |
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