NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209596_1044568

Scaffold Ga0209596_1044568


Overview

Basic Information
Taxon OID3300027754 Open in IMG/M
Scaffold IDGa0209596_1044568 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2367
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)8
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063654Metagenome / Metatranscriptome129N
F066734Metagenome126Y
F085612Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209596_10445682F085612AGGVNVTDPEYDGEIVTLGIRIFEGVADDLPRWQPWIAGETAHCVASLYRDGANHWRRASVTRGSTRGVWEIILRDGRYAVVPWGGGRDAEVDLGTDRAVALAHLHERLATLTAGQPRGQMELGL
Ga0209596_10445683F063654GGAGMETRTTKVRATLAPRMDATRYTHSYVVNAVPQYRPFMVNEDGRSVLHWGLITWDQQDRERRNEAGGQIVRLTESDGVYTIRIVGPMTVRDWSAAKLSKARAHNGEWRDVWTGAAADGVTLMEAVARLRALRDAMQEDADAFRRGL
Ga0209596_10445685F066734GGAGMRTRDLVQDALWIAFTASLAWARSAGRHWRRIVAVTTMGIAIARAVIWIAKAVASAGTVDAFLNLIGLGEYVAPFEAAVDSVIATVVAGILTVTPNG
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