Scaffold Ga0209596_1134181

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209596_1134181

Scaffold Ga0209596_1134181

Overview

Basic Information
Taxon OID	3300027754 Open in IMG/M
Scaffold ID	Ga0209596_1134181 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1120
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Montjoie, Canada
Coordinates	Lat. (^o)	45.4091	Long. (^o)	-72.0994	Alt. (m)		Depth (m)	8
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F010618	Metagenome	301	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209596_11341812	F010618	AGGAG	MTLKELILKLQELDKKYEQYSQDTELVLAIHSKNEFNPEVNLDYIDEVLHPALDTFSGYICRIVLCGEFEQED
Ga0209596_11341813	F002406	GGA	MSDRLRDELSSEYDDETKDLIVRAFMRGLYQDPSIVEELKSSSLIESDYFEDED
Ga0209596_11341814	F002398	GAGG	MLSLISIFVLASLDPIKNFVPLKTYISENAKIHCYVYFINEDIPDFPRVNLIEKNKHDFFEYLDTIGIEHSKVGNYYFFNRKNK

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