Scaffold Ga0209296_1000171

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209296_1000171

Scaffold Ga0209296_1000171

Overview

Basic Information
Taxon OID	3300027759 Open in IMG/M
Scaffold ID	Ga0209296_1000171 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	57312
Total Scaffold Genes	84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	66 (78.57%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006979	Metagenome / Metatranscriptome	360	Y
F009065	Metagenome / Metatranscriptome	323	Y
F021093	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209296_100017135	F009065	AGGA	MKLFKKKEPWLKPFSEKVSNRVSKIPTAELEQWVDQSLYEIGRCMTAYSKQREPMFLNEALLGAEALHAVIDELNRRTTRH
Ga0209296_100017172	F021093	AGGAGG	MGNPFIIAEDLALKTHLSGLTVSDEKSASRQVKLWFGYPDVEVRAQEFPFVTIDLIDIMPSNERQTSGFTYDSDYNGTVAVNSDGAYGYEIPIAYDLIYQITSYARHPRHDRAIMFQLLNKFPSKFGKLPVPNQLGTEIGYRSMFLDGFVKRDAVEGETGNRRLLRNVLSVRVISEMSPELALSRTPYVEEVSLATTPTPPSGYTLV
Ga0209296_10001718	F006979	GAG	MSKVIKAAGKKHTVKKNKKGEVIVDHAGNTGKYDQINLTKKAGSKTIAQGVKATREWHKNNG

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