NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000201

Scaffold Ga0209296_1000201


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000201 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52845
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)90 (81.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007263Metagenome / Metatranscriptome354Y
F013184Metagenome / Metatranscriptome273Y
F018702Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_10002014F007263AGGAMAFIDTTEFYEIADETWIHCDASQFKYYCKAHNELMGCYYCEFDYDKPCGCDE
Ga0209296_100020155F013184AGGAMQNNYAFVIKLAGNVSAKNEAEANKKINAHLDDLGAIESAQHDLHWPDASWEMEYELK
Ga0209296_100020193F018702AGGMKTEAKYVRRRIAVGLIFLALMAWALDATTPEMCKVPTEQMNQFCLDLLYP

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