NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1000399

Scaffold Ga0209296_1000399


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1000399 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37390
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (84.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001396Metagenome / Metatranscriptome705Y
F012451Metagenome / Metatranscriptome280Y
F012663Metagenome / Metatranscriptome278Y
F035228Metagenome / Metatranscriptome172Y
F071029Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100039918F071029N/AVTTLLDARQQAFLDWICTPSVARIPATQDAYAKQENVDVATLRRWKLKPIFKAEWERRVNEQQGSPERTQKLLDNLFDRAMDGDNNSAKLYLQATGRLAPVTLSVEHSGKVSDLSDTDLAALIASNAVAEQQFRLNTAKTA
Ga0209296_100039943F035228GGCGGMNKSDYDIGPMPNDWQTDLTFGHKGEKLVSEFLEKIGAGAFEVKTDRYRNGRMVLEMKQNPRRRMNDDGTAVWIPSGLAITKAEWWVYVYALDGSFVILSVPRIKRYLKANKSRFCPTKMHKFAWRSGNPSMGYLLEPEDVMDMMINEKYDLS
Ga0209296_100039953F012451AGGAVAYLAMTASTIRSTVRSITDLDTTDIPDSLLNLYIRDGYYRILDLEKRWDFLETSFSFNTVSEQRAYTISAFTADPIGQIVSVIDVSGIGMRLEMVGHDMAEQTYLGAYDTSGNPLFYSFWQGKIHLYPKPNNVRSLAVRAYREPVDWVTTGANVDASVNLHFPLVYYVCSRVYQRLEDSTMAAEYKAAFTEGVVLAKENLLKPNSHAHLRLSQGQTSGRPTFQGWMLKMGQDLGNN
Ga0209296_10003997F001396GGAMETIIVPIIVAIISGPIVVVINRLRKENTDQHAEARTLLRQVIDRVDSVGTKIDNHIGWHDGLKDKDEA
Ga0209296_10003998F012663AGGAMMPFTCQTCSVEVVVDEIPPRGEICFKCHIQTVNLGFTYGKEVFHGPTITELQRKTVSDAKINGYDAQPVTNWM
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