NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209296_1001140

Scaffold Ga0209296_1001140


Overview

Basic Information
Taxon OID3300027759 Open in IMG/M
Scaffold IDGa0209296_1001140 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21113
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007919Metagenome / Metatranscriptome342Y
F013889Metagenome / Metatranscriptome267Y
F037700Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0209296_100114016F013889N/AMSRTFRNLEGMHKGALRCPHTFNEIRQLDGILHEEDLEGLPVSKVNHMKAREHNLPTAWDDNVVSGYYQQDYEV
Ga0209296_10011405F037700N/AMTEYRIRKETYGNTTKYYPQQKRLFWWFNIFAFDVYFDGGYDTLEKAQEHLCNYLRKPVVELIEFDPERDCK
Ga0209296_10011406F007919GGAMTNKLKFTQVSRVICPKTGIHYLDAIDEYGNHWTAEMRTDVEPWTTYSEMWKQDPQQPVK
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